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33,761 datasets found
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eQTL associations on Chromosome 22
The University of AucklandDisease-associated SNPs on chromosome 22 were tested for eQTL associations using GTEx analysis (v7) and the CODeS3D pipeline. This dataset contains significant associations (FDR 0.05) from both methods.Created 1 August 2019 • Updated 27 April 2024 -
Phenotype-eGene associations in some multimorbid clusters.
The University of AucklandConvex biclustering of shared eGenes among phenotypes resulted in several clusters (Supplementary Figure 4). For each eGene in a cluster, an eGene score (i.e. the percentage of the phenotypes whose associated variants affect the expression of the eGene) is calculated. This data gives for each eGene, the eGene score, number of traits with which the eGene...Created 1 August 2019 • Updated 27 April 2024 -
eGenes in mendelian disorders
The University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes). Analysis of the OMIM data shows that eGenes, which are also involved in rare Mendelian disorders are spatially associated with eQTLs marked by common...Created 1 August 2019 • Updated 27 April 2024 -
eQTLs in the poly-unsaturated fat metabolism cluster
The University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes). Convex biclustering was then used to segregate phenotypes that share eGenes, which implies a common underlying molecular mechanism. In the cluster that is built...Created 1 August 2019 • Updated 27 April 2024 -
Pleiotropy matrices for eGenes and eQTLs
The University of AucklandThe Phenotype eQTL overlap sheet has names of phenotypes in columns TraitX and TraitY. The number of eQTLs identified for TraitX and TraitY are given in eQTLsX and eQTLsY. The column, Common, is the number of eQTLsY that are in eQTLsX. Ratio is Common divided by eQTLsX. The Phenotype eGene overlap sheet has names of phenotypes in columns TraitX and...Created 1 August 2019 • Updated 27 April 2024 -
Visualisation files for multimorbidity analysis
The University of AucklandChromatin interactions (using Hi-C) and functional (using eQTL) data were used to identify long-range regulatory associations involving >20,000 GWAS variants and their target genes (i.e. eGenes) in >1,350 phenotypes in the GWAS Catalog. Using convex biclustering, we segregated phenotypes based on the eGenes they share, which implies a common...Created 1 August 2019 • Updated 27 April 2024 -
Protocol for systematic review: Associations of children’s active school...
The University of AucklandSystematic review protocol using PROSPERO criteria for review titled: Associations of children’s active school travel with perceptions of the physical environment and characteristics of the social environment: a systematic review.Created 1 August 2019 • Updated 27 April 2024 -
Gametophyte niche differences among sympatric tree ferns
The University of AucklandR code and data for submitted Biology Letters paper to be run in conjunction with other data stored in gametophyte ecology project. Data includes: - development to size threshold of gametophytes of three species of Cyathea - germination percentages etc. - irradiance levels in the understorey of varied NZ forest types - orthophosphate concentrations of...Created 1 August 2019 • Updated 27 April 2024 -
PhD Thesis Appendix
The University of AucklandAppendix files associated with the PhD thesis "Chromatin organization and gene regulation in granulocytic cells" by Elsie Carlota Jacobson Supplementary table 1. Significantly differentially expressed genes. All genes with significantly differential gene expression (false discovery rate (FDR) <0.05) between either 5µm pores compared to control, 14µm pores...Created 1 August 2019 • Updated 27 April 2024 -
MetaPost Three Ways
The University of AucklandThis report describes three different approaches to communicating between R and MetaPost: importing the PostScript output from MetaPost with the 'grImport' package; calling the mpost program to solve MetaPost paths with the 'metapost' package; and calling the mplib library to solve MetaPost paths with the 'mplib' package.Created 1 August 2019 • Updated 27 April 2024 -
Supplementary_Material_Chapter_1_The_regulation_of_flowering_time
The University of AucklandSupplementary material from Chapter 1 of my thesis entitled The regulation of flowering timeCreated 1 August 2019 • Updated 27 April 2024 -
Supplementary_Material_Chapter_2_Materials_and_methods
The University of AucklandSupplementary material from Chapter 2 of my thesis entitled Materials and methodsCreated 1 August 2019 • Updated 27 April 2024 -
List of species endemic to each realm
The University of AucklandThis is a list of species that only occurred in each ot the marine realms in the following paper:Costello MJ, Tsai P, Wong PS, Cheung A, Basher Z., Chaudhary C. 2017. Marine biogeographic realms and species endemicity. Nature Communications 8 (1057).DOI; 10.1038/s41467-017-01121-2Created 1 August 2019 • Updated 27 April 2024 -
An ISCC-NBS Colour List for ‘roloc’
The University of AucklandThis report describes the development of a colour list and colour metric for the ‘roloc’ package that is based on the ISCC-NBS System of Color Designation.Created 1 August 2019 • Updated 27 April 2024 -
Test Data CFS LOCKED.xlsx
The University of AucklandUsing the data dictionaries from the Growing Up in New Zealand longitudinal cohort study, I have developed an index to measure child food security.This index uses dummy-data. In the next update I hope to use actual data.Created 1 August 2019 • Updated 27 April 2024 -
Putting the Macron in Māori: Accented text in R Graphics
The University of AucklandThis report describes different methods for correctly rendering macrons in Māori text within R plots. The topics covered will also have relevance to rendering other special characters in R graphics and possibly to rendering macrons in other software.Created 1 August 2019 • Updated 27 April 2024 -
APCWE9 all papers
The University of AucklandAll the papers reviewed and accepted by the APCWE-IX Programme Committee for Presentation at the 9th Asia-Pacific Conference on Wind Engineering, University of Auckland, Auckland, New Zealand, held from 3-7 December 2017.Created 1 August 2019 • Updated 27 April 2024 -
Poi and Tai Chi research: physical data
The University of AucklandPhysical data from the poi and Tai Chi study. Measures systolic blood pressure (SYSTOLIC) diastolic blood pressure (DIASTOLIC) heart rate (HR) functional reach (FR) four stage balance test (FOURSTGBLNCE) sit to stand test (SITSTAND) 9 hole peg (PEG) hand grip (HGRIP) pinch grip (PGRIP) shoulder range of motion (SHLDR) elbow range of motion (ELBOW) wrist...Created 1 August 2019 • Updated 27 April 2024 -
Poi and Tai Chi research: cognitive data
The University of AucklandCognitive data from the poi and Tai Chi study. All measures are from CNS Vital Signs Computerized Neurocognitive Assessment Software. Measures composite memory (CMEM) verbal memory (VERMEM) visual memory (VISMEM) psychomotor speed (PSYSPD) reaction time (RT) cognitive flexibility (COGFLEX) processing speed (PROCSPD) executive function (EXECF) motor speed...Created 1 August 2019 • Updated 27 April 2024 -
yellow_tripdata_2016-07trim.csv
The University of AucklandData from the NYC Taxi and Limousine Commission on taxi trips in July to December 2016. Collected here for a manuscript on fitting generalised linear models to large data sets. The files have had their header line removed, because it's not consistent with the data format (there are blank fields at the end). Obtained from...Created 1 August 2019 • Updated 27 April 2024
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